Publications

Pre-prints:

TBA

Research articles:

• Yousefi, M. #, See, W. R., Aw-Yang, K. L., Lee, W. S., Yong, C. L., Fanusi, F., Smith, G. J. D., Ooi, E. E., Li, S., Ghosh, S., and Ooi, Y. S. # (2024). GeneRaMeN enables integration, comparison, and meta-analysis of multiple ranked gene lists to identify consensus, unique, and correlated genes. Briefings in Bioinformatics, 25(5), bbae452.

  • Co-corresponding author

• Yousefi, M.*, Lee, W. S.*, Chan, W. O. Y.*, He, W., Mah, M. G., Yong, C. L., Deerain, J. M., Wang, L., Arcinas, C., Yan, B., Tan, D., Sia, W. R., Gamage, A. M., Yang, J., Hsu, A. C-. Y., Li, S., Linster, M., Yang, X., Ghosh, S., Anderson, D. E., Smith, G. J. D., Tan, C. W., Wang, L-. F., and Ooi, Y. S. (2023). Betacoronaviruses SARS-CoV-2 and HCoV-OC43 infections in IGROV-1 cell line require aryl hydrocarbon receptor. Emerging Microbes & Infections, 12(2), 2256416.

  • Co-first author

• Cui, L., Yousefi, M., Yap, X., Koh, C. W., Tay, K. S. L., Ooi, Y. S., and Chan, K. R. (2023). Mass Spectrometry-based Lipidomics, Lipid Bioenergetics, and Web Tool for Lipid Profiling and Quantification in Human Cells. Bio-protocol, 13(16).

• Ng, W. C., Kwek, S. S., Sun, B., Yousefi, M., Ong, E. Z., Tan, H. C., Puschnik, A. S., Chan, K. R., Ooi, Y. S., and Ooi, E. E. (2022). A fast-growing dengue virus mutant reveals a dual role of STING in response to infection. Open Biology, 12220227220227.

• Yousefi, M., Lee, W. S., Yan, B., Cui, L., Yong, C. L., Yap, X., Tay, K. S. L., Qiao, W., Tan, D., Nurazmi, N. I., Linster, M., Lee, Y. H., Smith, G. J., Carette, J. E., Ooi, E. E., Chan, K. R. and Ooi, Y. S. (2022). TMEM41B and VMP1 modulate cellular lipid and energy metabolism for facilitating dengue virus infection. PLoS Pathogens, 18(8), e1010763.

• Yousefi, M., Marashi, S. A., Sharifi-Zarchi, A. and Taleahmad, S., (2019). The metabolic network model of primed/naive human embryonic stem cells underlines the importance of oxidation-reduction potential and tryptophan metabolism in primed pluripotency. Cell & Bioscience, 9(1), p.71.

• Taleahmad, S., Alikhani, M., Mollamohammadi, S., Yousefi, M., Taei, A., Hassani, S. N., Baharvand, H. and Salekdeh, G. H., (2019). Inhibition of Human Y Chromosome Gene, SRY, Promotes Naive State of Human Pluripotent Stem Cells. Journal of Proteome Research, 18(12), pp.4254-4261.

• Sababi, M., Marashi, S. A., Pourmajidian, M., Pourtabatabaei, S. S., Darki, F., Sadrzadeh, M. R., Dehghani, M., Zandieh, A., Zim, M. K., Yousefi, M., Jamalkhah, M., Tabatabaei, S. K., Safaeifard, F., Talaei, A., Sobat, M., Moakedi, F., and Nejadi, P., (2017). How accessibility influences citation counts: The case of citations to the full text articles available from ResearchGate. RT. A Journal on Research Policy and Evaluation, 5(1). (1,0) 428

Review articles:

• See, W. R., Yousefi, M., and Ooi, Y. S. (2024). A review of virus host factor discovery using CRISPR screening. mBio 0:e03205-23.

• Lee, W. S.*, Yousefi, M.*, Yan, B., Yong, C. L., and Ooi, Y. S. (2021). Know your enemy and know yourself – the case of SARS-CoV-2 host factors. Current Opinion in Virology, 50, 159-170.

  • Featured on the journal cover
  • Co-first author